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sspace v.3.0  (Illumina Inc)


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    Structured Review

    Illumina Inc sspace v.3.0
    Sspace V.3.0, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/sspace/sspace+v+3+0/pm37263313-55-6-18
    Average 90 stars, based on 1 article reviews
    sspace v.3.0 - by Bioz Stars, 2026-09
    90/100 stars

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    Related Articles

    Sequencing:

    Article Title: Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape
    Article Snippet: .. For the analysis of cps loci and integrative and conjugative elements (ICEs), Illumina sequence reads were assembled de novo using Velvet , with scaffolds generated using SSPACE ( ) and sequence improvement conducted using the PAGIT pipeline ( ). ..

    Article Title: A draft genome of the brown alga, Cladosiphon okamuranus , S-strain: a platform for future studies of ‘mozuku’ biology
    Article Snippet: .. Subsequent scaffolding of the 31,858 contigs of Newbler output was performed with SSPACE using Illumina mate-pair sequence information ( Supplementary Table S1 ). ..

    Generated:

    Article Title: Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape
    Article Snippet: .. For the analysis of cps loci and integrative and conjugative elements (ICEs), Illumina sequence reads were assembled de novo using Velvet , with scaffolds generated using SSPACE ( ) and sequence improvement conducted using the PAGIT pipeline ( ). ..

    Scaffolding:

    Article Title: Draft genome of the brown alga, Nemacystus decipiens , Onna-1 strain: Fusion of genes involved in the sulfated fucan biosynthesis pathway
    Article Snippet: .. Subsequent scaffolding of the Platanus output was performed using SSPACE 3.0 , based on Illumina mate-pair information. ..

    Article Title: Nemertean and phoronid genomes reveal lophotrochozoan evolution and the origin of bilaterian heads.
    Article Snippet: .. Scaffolding was conducted by mapping Illumina paired-end and mate pair reads to contigs using SSPACE (v3.0)58. ..

    Article Title: A draft genome of the brown alga, Cladosiphon okamuranus , S-strain: a platform for future studies of ‘mozuku’ biology
    Article Snippet: .. Subsequent scaffolding of the 31,858 contigs of Newbler output was performed with SSPACE using Illumina mate-pair sequence information ( Supplementary Table S1 ). ..



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